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Posts Tagged ‘LLM’

C compiler conformance testing: with ChatGPT assistance

October 27, 2024 (4 weeks ago) 4 comments

How can developers check that a compiler correctly implements all the behavior requirements contained in the corresponding language specification?

An obvious approach is to write lots of test cases for each distinct behavior; such a collection of tests is known as a validation suite, when used by a standard’s organization to test compilers/OS interfaces/etc. The extent to which a compiler’s behavior, when fed these tests, matches that listed in the language specification is a measure of its conformance.

In a world of many compilers with significant differences in behavior (i.e., pre-Open source), it makes economic sense for governments to sponsor the creation of validation suites, and/or companies to offer such suites commercially (mainly for C and C++). The spread of Open source compilers decimated compiler diversity, and compiler validation is fading into history.

New features continue to be added to Cobol, Fortran, C, and C++ by their respective ISO Standard’s committee. If governments are no longer funding updates to validation suites and the cost of commercial suites is too high for non-vendors (my experience is that compiler vendors find them to be cost-effective), how can developers check that a compiler conforms to the behavior specified by the Standard?

How much effort is required to create some minimal set of compiler conformance tests?

C is the language whose requirements I am most familiar with. The C Standard specifies that a conforming compiler issue a diagnostic for a violation of a requirement appearing in a Constraint clause, e.g., “For addition, either both operands shall have arithmetic type, or …”

There are 80 such clauses, containing around 530 non-blank lines, in N3301, the June 2024 draft. Let’s say 300+ distinct requirements, requiring a minimum of one test each. Somebody very familiar with the C Standard might take, say, 10 minutes per test, which is 3,000 minutes, or 50 hours, or 6.7 days; somebody slightly less familiar might take, say, at least an hour, which is 300+ hours, or 40+ days.

Lots of developers are using LLMs to generate source code from a description of what is needed. Given Constraint requirements in the C Standard, can an LLM generate tests that do a good enough job checking a compiler’s conformance to the C Standard?

Simply feeding the 157 pages from the Language chapter of the C Standard into an LLM, and asking it to generate tests for each Constraint requirement does not seem practical with the current state of the art; I’m happy to be proved wrong. A more focused approach might produce the desired tests.

Negative tests are likely to be the most challenging for an LLM to generate, because most publicly available source deals with positive cases, i.e., it is syntactically/semantically correct. The wording of Constraints sometimes specifies what usage is not permitted (e.g., clause 6.4.5.3 “A floating suffix df, dd, dl, DF, DD, or DL shall not be used in a hexadecimal floating literal.”), other times specifies what usage is permitted (e.g., clause 6.5.3.4 “The first operand of the . operator shall have an atomic, qualified, or unqualified structure or union type, and the second operand shall name a member of that type.”), or simply specifies a requirement (e.g., clause 6.7.3.2 “A member declaration that does not declare an anonymous structure or anonymous union shall contain a member declarator list.”).

I took the text from the 80 Constraint clauses, removed footnote numbers and rejoined words split at line-breaks. The plan was to prefix the text of each Constraint with instructions on the code requires. After some experimentation, the instructions I settled on were:

Write a sequence of very short programs which tests that a
C compiler correctly flags each violation of the requirements
contained in the following excerpt from the latest draft of the
C Standard:

Initially, excerpt was incorrectly spelled as except, but this did not seem to have any effect. Perhaps this misspelling is sufficiently common in the training data, that LLM weights support the intended association.

Experiments using Grok and ChatGPT 4o showed that both generated technically correct tests, but Grok generated code that was intended to be run (and was verbose), while the ChatGPT 4o output was brief and to the point; it did such a good job that I did not try any other LLMs. For this extended test, use of the web interface proved to be an effective approach. Interfacing via the API is probably more practical for larger numbers of requirements.

After some experimentation, I submitted the text from 31 Constraint clauses (I picked the non-trivial ones). The complete text of the questions and ChatGPT 4o responses (text files).

ChatGPT sometimes did not generate tests for all the requirements, when these were presented as they appeared in the Constraint, but did generate tests when the containing sentence was presented in isolation from other requirement sentences. For instance, the following sentence from clause 6.5.5 Cast Operators:

Conversions that involve pointers, other than where permitted by
the constraints of 6.5.17.2, shall be specified by means of an
explicit cast.

was ignored when included as part of the complete Constraint, but when presented in isolation, reasonable tests were generated.

The responses never contained more than 10 test cases. I am guessing that this is the result of limits on response cpu time/length. Dividing the text of longer Constraints should solve this issue.

Some assumptions made by ChatGPT 4o about the implementation can be deduced from its responses, e.g., it appears to treat the type short as containing fewer than 32-bits (it assumes that a bit-field defined as a short containing 32-bits will be treated as a Constraint violation). This is not surprising, given the volume of public C source targeting the Intel x86.

I was impressed by the quality of the 242 test cases generated by ChatGPT 4o, which often included multiple tests for the same requirement (text files).

While it sometimes failed to produce a test for a requirement, I did not spot any incorrect tests (as in, not correctly testing for a violation of a listed requirement); the subset of tests feed through behaved as claimed), and I eventually found a prompt that appears to be creating a downloadable zip file of all the tests (most prompts resulted in a zip file containing some collection of 10 tests); the creation process is currently waiting for available cpu time. I now know that downloading a zip file containing one file per test, after each user prompt, is the more reliable option.

Obtaining source code for training LLMs

June 2, 2024 No comments

Training a large language model to be a coding assistant requires huge amounts of source code.

Github is a very well known publicly available repository of code, and various sites have created substantial collections of GitHub repos, e.g., GitTorrent, and Google’s BigQuery. Since 2017 the Software Heritage has been amassing the world’s source code, and now looks like it will become the default site for those seeking LLM source code training data. The benefits of using the Software_Heritage, include:

  • deduplication at the file level for free. Files are organized using a cryptographic hash of their contents (i.e., a Merkle tree), which is user visible. GitHub may deduplicate internally, but the user visible data structure is based on individual repositories. One study found that 70% of code on GitHub are clones. Deduplication has been a major housekeeping task when creating a source code training dataset.

    A single space character or newline is enough to cause a cryptographic hash to change and a file to be treated as different. Studies of file contents has found them differing by the presence/absence of a license at the start of the file, and other non-consequential differences. The LLM training dataset “The Stack v2” has further deduplicated the Software Heritage dataset, removing over 50% of files,

  • accessed using AWS. The 11TiB of data can be bulk downloaded from the S3 bucket s3://softwareheritage/graph/. An Amazon Athena hosted version of the dataset can be queried using the Presto distributed SQL engine (filename suffix could be used to extract files likely to contain source in particular languages). Amazon also have an Azure Databricks hosted version.

    Suggestions for the best way of accessing this data, for LLM training, welcome,

  • Software_Heritage hosts more code than GitHub, although measurements from late 2021 suggests that at the time, over 95% originated on GitHub.

StarCoder2, released at the end of February, is an open weights model trained in partnership with the Software Heritage (a year ago, version 1 of StarCoder was trained using an order of magnitude less source).

How much source is available via the Software Heritage?

As of July 2023 the site hosted 1.6*10^10 files.

Let’s assume 64 lines per file, and 26 non-whitespace characters per line, giving 2.7*10^13 non-whitespace characters. How many tokens is this?

The most common statement is assignment, which typically contains 4 language tokens (e.g., a = b ; ). There is an exponential decline in language tokens per line (Fig 770.17). The question is how many LLM tokens per computer language identifier, which tend to be abbreviated; I have no idea how these map to LLM tokens.

Assuming 10 LLM tokens per line, we get: 10^13 LLM tokens; this is 2.7 non-whitespace characters per token, which feels about right.

The Stack v2 Hugging Face page lists the deduplicated dataset as containing 10^12 tokens. However, they only include files in the main branch (the Software Heritage dataset includes files containing branches and commits), and the total number of files in the full Stack v2 dataset is 3.3*10^9, with the deduped training dataset containing 6.5*10^8 files (they do not train using copyleft files, which are approximately 20-25% of the files on GitHub).

My calculation probably overestimated the number of tokens on a line. LLM’s specifically trained on source code have tokenisers optimized for the characteristics of code, e.g., allowing tokens to span whitespace to allow for idioms such as import numpy as np to be treated as single tokens.

Given the exponential growth of files available on the Software Heritage, it is possible that several orders of magnitude more tokens will eventually become available.

Licensing, in the form of the GPL, is a complication that hangs over the use of some public source code (maybe 25%). An ongoing class-action suit will likely take years to resolve, and it’s possible that model training will have improved to the extent that any loss of GPL’d code will not seriously impact model performance:

  1. When source is licensed under the GNU General Public License, do models that use it during training have themselves to be released under a GPL license? In November 2022 a class-action lawsuit was filed, challenging the legal­ity of GitHub Copi­lot and related OpenAI products. This case has yet to reach jury trial, and after that there will no doubt be appeals. The resolution is years in the future,
  2. if the plaintiffs win, with models trained using GPL’d code required to release the weights under a GPL license. The different source files used to build a project sometimes have different, incompatible, Open source licenses. LLM training does not require complete sets of project source files, so the presence of GPL’d source is not contagious within a project. If the same file appears with different licenses, one of which is the GPL, the simplest option may be to exclude it. One study found the GPL-3 license present under 2,871 different filenames.

Given that around 50% of GitHub repos don’t specify any license, and around 30% specify an MIT license, not using GPL’d code for training does not look like it will affect the training of general coding models. However, these models will have problems dealing with issues that require interfacing to GPL’d code.

Survey papers: LLMs will restore some level of usefulness

May 5, 2024 No comments

Scientific papers are like soap operas, in that understanding them requires readers to have some degree of familiarity with the ongoing plot.

How can people new to an opera quickly get up to speed with the ongoing story lines, without reading hundreds of papers?

The survey paper is intended to be the answer to this question. Traditionally written by an established researcher in the field, the 100+ pages aim to be an authoritative overview of the progress and setbacks of research on a particular topic within the last 5/10/15 years (depending on the rate/lack of progress since the last major survey paper).

These days research papers are often written by PhD students, with the professor doing the supervising, and getting their name tacked on to the end of the list of authors (professors can spend more time writing grant applications than writing research papers). Writing a single 100+ page survey paper is not a cost-effective use of an experienced person’s time, given the pressure to pump out papers, even when the ACM Computing Surveys is one of the highest ranked journals in computing. The short lifecycle of fields driven by the next fashionable topic is another disincentive.

Given the incentives, why are survey papers still being published?

In software engineering there are now two kinds of survey papers: 1) the traditional kind, written by people who see it as a service, or are not on the publish/perish treadmill, or early stage researchers surveying a niche topic, 2) PhD students using what we now call a Large language model summary approach, soon to be replaced by real LLMs.

So-called survey papers (at least in software engineering) are now regularly being written by members of the intended audience of traditional survey papers, i.e., PhD students who are new to the field and want a map of the territory showing the routes to the frontiers.

How does a person who knows almost nothing about a field write a (20-40 page, rarely 100+) survey paper about it?

A survey is based on the list of all the appropriate papers. In theory, appropriate papers have to meet some quality criteria, e.g., be published in a reputable journal/conference/blog. In practice, the list is created by searching various academic publication search engines (e.g., web of science, or the ACM digital library) using a targeted regular expression; for instance:

(agile OR waterfall OR software OR "story points" OR
 "story point" OR "user stories" OR "function points" OR
 "planning poker" OR "pomodoros" OR "use case" OR
 "source code" OR "DORA metrics" OR scrum)
(predict OR prediction OR quantify OR dataset OR
 schedule OR lifecycle OR "life cycle" OR estimate OR
 estimates OR estimating OR estimation OR estimated OR
 #noestimates OR "evidence" OR empirical OR evolution OR
 ecosystems OR cognitive OR economics OR reliability OR
 metrics OR experiment)

The list of papers returned may be filtered further, depending on how many there are (a hundred or two does not look too lightweight, and does not require an excessive amount of work).

Next, what to say about these papers, and how many of them actually need to be read?

The bottom of the barrel, vacant ideas, survey paper tabulates easily calculated metrics (e.g., number of papers per year, number of authors per paper, clusters of keywords), and babble on about paper selection criteria, keyword growth and diversity, and more research is needed.

For a survey paper to appear in a layer above the vacant ideas level, the authors have to process some amount of the paper contents. The paper A Systematic Literature Review on Reasons and Approaches for Accurate Effort Estimations in Agile by Pasuksmit, Thongtanunam, and Karunasekera is a recent example of one such survey. The search criteria returned 519 papers, of which 82 were selected for inclusion, i.e., cited. The first 10, of the 42 pages, covered the selection process and the process used to answer the two research questions; RQ1: What are the discovered reasons for inaccurate estimations in Agile iterative development? and RQ2: What are the approaches proposed to improve effort estimation in Agile iterative development?

The main answers to the research questions appeared in: 1) tables which listed attributes relating to the question and the papers that had something to say about that attribute, and 2) sections containing a few paragraphs highlighting various points made by papers about some attribute.

My primary interest was Table 11, which listed the papers/dataset used. A few were new to me, but unfortunately all confidential.

A survey can only be as good as the papers it is based on. The regular expression approach can miss important papers and include unimportant papers. The Pasuksmit et al paper only included one paper by the leading researcher in Agile effort estimation, and included papers that I wouldn’t waste disk space on a pdf file.

I would not recommend these ‘LLM’ style surveys to newcomers to a field. They don’t connect the lines of research, call out the successes/failures, and they don’t provide a map of the territory.

The readership of these survey papers are the experienced researchers, who will scan the list of cited papers looking for anything they might have missed.

I’m not expecting LLMs to be capable of producing experienced professor level survey papers any time soon. In a year or two, LLMs will surely be doing a better job than PhD students.

Chinchilla Scaling: A replication using the pdf

April 28, 2024 2 comments

The paper Chinchilla Scaling: A replication attempt by Besiroglu, Erdil, Barnett, and You caught my attention. Not only a replication, but on the first page there is the enticing heading of section 2, “Extracting data from Hoffmann et al.’s Figure 4”. Long time readers will know of my interest in extracting data from pdfs and images.

This replication found errors in the original analysis, and I, in turn, found errors in the replication’s data extraction.

Besiroglu et al extracted data from a plot by first converting the pdf to Scalable Vector Graphic (SVG) format, and then processing the SVG file. A quick look at their python code suggested that the process was simpler than extracting directly from an uncompressed pdf file.

Accessing the data in the plot is only possible because the original image was created as a pdf, which contains information on the coordinates of all elements within the plot, not as a png or jpeg (which contain information about the colors appearing at each point in the image).

I experimented with this pdf-> svg -> csv route and quickly concluded that Besiroglu et al got lucky. The output from tools used to read-pdf/write-svg appears visually the same, however, internally the structure of the svg tags is different from the structure of the original pdf. I found that the original pdf was usually easier to process on a line by line basis. Besiroglu et al were lucky in that the svg they generated was easy to process. I suspect that the authors did not realize that pdf files need to be decompressed for the internal operations to be visible in an editor.

I decided to replicate the data extraction process using the original pdf as my source, not an extracted svg image. The original plots are below, and I extracted Model size/Training size for each of the points in the left plot (code+data):

svg of Figure 4 from 'Training Compute-Optimal Large Language Models'.

What makes this replication and data interesting?

Chinchilla is a family of large language models, and this paper aimed to replicate an experimental study of the optimal model size and number of tokens for training a transformer language model within a specified compute budget. Given the many millions of £/$ being spent on training models, there is a lot of interest in being able to estimate the optimal training regimes.

The loss model fitted by Besiroglu et al, to the data they extracted, was a little different from the model fitted in the original paper:

Original: L(N, D) = 1.69+406.40/N^{0.34}+410.7/D^{0.28}

Replication: L(N, D) = 1.82+514.0/N^{0.35}+2115.2/D^{0.37}

where: N is the number of model parameters, and D is the number of training tokens.

If data extracted from the pdf is different in some way, then the replication model will need to be refitted.

The internal pdf operations specify the x/y coordinates of each colored circle within a defined rectangle. For this plot, the bottom left/top right coordinates of the rectangle are: (83.85625, 72.565625), (421.1918175642, 340.96202) respectively, as specified in the first line of the extracted pdf operations below. The three values before each rg operation specify the RGB color used to fill the circle (for some reason duplicated by the plotting tool), and on the next line the /P0 Do is essentially a function call to operations specified elsewhere (it draws a circle), the six function parameters precede the call, with the last two being the x/y coordinates (e.g., x=154.0359138125, y=299.7658568695), and on subsequent calls the x/y values are relative to the current circle coordinates (e.g., x=-2.4321790463 y=-34.8834544196).

Q Q q 83.85625 72.565625 421.1918175642 340.96202 re W n 0.98137749
0.92061729 0.86536915 rg 0 G 0.98137749 0.92061729 0.86536915 rg
1 0 0 1 154.0359138125 299.7658568695 cm /P0 Do
0.97071849 0.82151775 0.71987163 rg 0.97071849 0.82151775 0.71987163 rg
1 0 0 1 -2.4321790463 -34.8834544196 cm /P0 Do

The internal pdf x/y values need to be mapped to the values appearing on the visible plot’s x/y axis. The values listed along a plot axis are usually accompanied by tick marks, and the pdf operation to draw these tick marks will contain x/y values that can be used to map internal pdf coordinates to visible plot coordinates.

This plot does not have axis tick marks. However, vertical dashed lines appear at known Training FLOP values, so their internal x/y values can be used to map to the visible x-axis. On the y-axis, there is a dashed line at the 40B size point and the plot cuts off at the 100B size (I assumed this, since they both intersect the label text in the middle); a mapping to the visible y-axis just needs two known internal axis positions.

Extracting the internal x/y coordinates, mapping them to the visible axis values, and comparing them against the Besiroglu et al values, finds that the x-axis values agreed to within five decimal places (the conversion tool they used rounded the 10-digit decimal places present in the pdf), while the y-axis values appeared to differ differed by about 10%.

I initially assumed that the difference was due to a mistake by me; the internal pdf values were so obviously correct that there had to be a simple incorrect assumption I made at some point. Eventually, an internal consistency check on constants appearing in Besiroglu et al’s svg->csv code found the mistake. Besiroglu et al calculate the internal y coordinate of some of the labels on the y-axis by, I assume, taking the internal svg value for the bottom left position of the text and adding an amount they estimated to be half the character height. The python code is:

y_tick_svg_coords = [26.872, 66.113, 124.290, 221.707, 319.125]
y_tick_data_coords = [100e9, 40e9, 10e9, 1e9, 100e6]

The internal pdf values I calculated are consistent with the internal svg values 26.872, and 66.113, corresponding to visible y-axis values 100B and 40B. I could not find an accurate means of calculating character heights, and it turns out that Besiroglu et al’s calculation was not accurate.

I published the original version of this article, and contacted the first two authors of the paper (Besiroglu and Erdil). A few days later, Besiroglu replied with details of why they thought that the 40B line I was using as a reference point was actually at either 39.5B or 39.6B (based on published values for the Gopher budget on the x-axis), but there was uncertainty.

What other information was available to resolve the uncertainty? Ah, the right plot has Model size on the x-axis and includes lines that appear to correspond with axis values. The minimum/maximum Model size values extracted from the right plot closely match those in the original paper, i.e., that ’40B’ line is actually at 39.554B (mapping this difference from a log scale is enough to create the 10% difference in the results I calculated).

My thanks to Tamay Besiroglu and Ege Erdil for taking the time to explain their rationale.

The y-axis uses a log scale, and the ratio of the distance between the 10B/100B virtual tick marks and the 40B/100B virtual tick marks should be {log(100)-log(10)}/{log(100)-log(40)}. The Besiroglu et al values are not consistent with this ratio; consistent values below (code+data):

# y_tick_svg_coords = [26.872, 66.113, 124.290, 221.707, 319.125]
  y_tick_svg_coords = [26.872, 66.113, 125.4823, 224.0927, 322.703]

When these new values are used in the python svg extraction code, the calculated y-axis values agree with my calculated y-axis values.

What is the equation fitted using these corrected Model size value? Answer below:

Replication: L(N, D) = 1.82+514.0/N^{0.35}+2115.2/D^{0.37}

Corrected size: L(N, D) = 1.82+548.5/N^{0.35}+2113.2/D^{0.37}

The replication paper also fitted the data using a bootstrap technique. The replication values (Table 1), and the corrected values are below (standard errors in brackets; code+data):

Parameter  Replication     Corrected
A             482.01         370.16
             (124.58)       (148.31)
B            2085.43        2398.85
            (1293.23)      (1151.75)
E               1.82           1.80
               (0.03)         (0.03)
α               0.35           0.33
               (0.02)         (0.02)
β               0.37           0.37
               (0.02)         (0.02)

where the fitted equation is: L(N, D) = E+A/N^{alpha}+B/D^{beta}

What next?

The data contains 245 rows, which is a small sample. As always, more data would be good.

Extracting named entities from a change log using an LLM

February 25, 2024 No comments

The Change log of a long-lived software system contains many details about the system’s evolution. Two years ago I tried to track the evolution of Beeminder by extracting the named entities in its change log (named entities are the names of things, e.g., person, location, tool, organization). This project was pre-LLM, and encountered the usual problem of poor or non-existent appropriately trained models.

Large language models are now available, and these appear to excel at figuring out the syntactic structure of text. How well do LLMs perform, when asked to extract named entities from each entry in a software project’s change log?

For this analysis I’m using the publicly available Beeminder change log. Organizations may be worried about leaking information when sending confidential data to a commercially operated LLM, so I decided to investigate the performance of a couple of LLMs running on my desktop machine (code+data).

The LLMs I used were OpenAI’s ChatGPT plus (the $20 month service), and locally: Google’s Gemma (the ollama 7b model), a llava 7b model (llava-v1.5-7b-q4.llamafile), and a Mistral 7b model (mistral-7b-instruct-v0.2.Q8_0.llamafile). I used 7 billion parameter models locally because this is the size that is generally available for Open sourced models. There are a few models supporting the next step-up, at 13 billion parameters, and a few at 30 billion.

All the local models start a server at localhost:8080, and provide various endpoints. Mozilla’s llamafile based system is compatible with OpenAI’s python package openai. The documentation for the Gemma based system I installed uses the ollama package. In both cases, the coding required is trivial; just add a few statements to create a question based on command line input:

import openai
import sys
 
prefix='List the named entities in the following sentences: '
input_str=sys.argv[1] # change log entry from command line
 
client = openai.OpenAI(
    base_url="http://localhost:8080/v1", # "http://<Your api-server IP>:port"
    api_key = "sk-no-key-required"
    )
 
stream = client.chat.completions.create(
    model="gpt-4",
    stream=True,
    temperature=0,
    seed=19,
    messages=[
      {"role": "system", "content": "You are ChatGPT, an AI assistant. Your top priority is achieving user fulfilment via helping them with their requests."},
      {"role": "user",
       'content': prefix+ input_str
      }
             ]
    )
# Print response
for chunk in stream:
    print(chunk.choices[0].delta.content or "", end="")
print()

How well did the models perform?

For rapid iteration, I used the web interface to ChatGPT. The responses started to appear within a few seconds and were displayed at a readable rate.

ChatGPT 3.5

When given a single change log entry, ChatGPT also provides a brief description of the named entity. In the following example, ‘twitter acct‘ and ‘blog posts‘ are not flagged as named entities:

User
print the named entities in the following quoted text "Created
this twitter acct to log user-visible improvements (UVIs) to
Beeminder. (Yes, this is a UVI. Everything counts no matter how
small!)  Very first UVI! Back then this counted but nowadays we
don't count things that are too ancillary like making Twitter
accounts or writing blog posts. We did count a few UVIs for
creating this fancy changelog but decided that's too ancillary
now too."
 
ChatGPT
To identify named entities in the quoted text, we need to look for
proper nouns, which typically include names of specific people,
organizations, locations, and sometimes unique entities. In the
provided text, here are the named entities:
 
    Beeminder - Refers to a specific service or product.
    Twitter - Refers to a specific social media platform.
    UVI (User-Visible Improvement) - Refers to a specific type of improvement.
    changelog - Refers to a specific type of document or record.

When asked to list the named entities in each of multiple lines, ChatGTP 3.5 performance drops. In the following response, the first line is identical to the example above; the response contains three, not four names entities. The second line contains named entities, but ChatGTP claims there are none. The response to the third line is accurate:

ChatGPT
 
Here are the named entities in each of the three lines:
 
    "Created this twitter acct" line:
        Twitter - Refers to a specific social media platform.
        UVIs (User-Visible Improvements) - Refers to a specific
 type of improvement.
        Beeminder - Refers to a specific service or product.
 
    "Added ridiculous dog-dressed-as-a-bee picture" line:
        None
 
    "Now suppressing reminder emails" line:
        reminder emails - Refers to a specific type of communication.
        bug fixes - Refers to a specific type of improvement aimed
at resolving software issues.
        UVIs (User-Visible Improvements) - Refers to a specific
type of improvement.

ChatGPT 4.0

ChatGPT 4.0 can handle multiple change log entries. The following is the response to the first three entries (the same three entries given the ChatGPT 3.5):

ChatGPT
 
To thoroughly identify the named entities within each line,
I'll systematically parse each one, focusing on extracting
specific types of entities such as organizations, people,
locations, dates, websites, and any other identifiable proper
nouns.
 
    Beeminder, Twitter, UVI: Organizations or products.
    dog-dressed-as-a-bee: Concept, not a proper noun but unique
enough to note.
    reminder emails: Concept, referring to a feature.

While it is possible to input 100 change log entries into the ChatGPT input box, the response contained no more than about 25 of them (there is a maximum limit on the number of input and output tokens).

Running locally

The machine I used locally contains 64G memory and an Intel Core i5-7600K running at 3.80GHz, with four cores. The OS is Linux Mint 21.1, running the kernel 5.15.0-76-generic. I don’t have any GPUs installed.

A GPU would probably significantly improve performance. On Amazon, the price of the NVIDIA Tesla A100 is now just under £7,000, an order of magnitude more than I am interested in paying (let alone the electricity costs). I have not seen any benchmarks comparing GPU performance on running LLMs locally, but then this is still a relatively new activity.

Overall, Gemma produced the best responses and was the fastest model. The llava model performed so poorly that I gave up trying to get it to produce reasonable responses (code+data). Mistral ran at about a third the speed of Gemma, and produced many incorrect named entities.

As a very rough approximation, Gemma might be useful. I look forward to trying out a larger Gemma model.

Gemma

Gemma took around 15 elapsed hours (keeping all four cores busy) to list named entities for 3,749 out of 3,839 change log entries (there were 121 “None” named entities given). Around 3.5 named entities per change log entry were generated. I suspect that many of the nonresponses were due to malformed options caused by input characters I failed to handle, e.g., escaping characters having special meaning to the command shell.

For around about 10% of cases, each named entity output was bracketed by “**”.

The table below shows the number of named entities containing a given number of ‘words’. The instances of more than around three ‘words’ are often clauses within the text, or even complete sentences:

# words    1    2    3    4    5    6    7    8    9   10   11   12   14
Occur   9149 4102 1077  210   69   22   10    9    3    1    3    5    4

A total of 14,676 named entities were produced, of which 6,494 were unique (ignoring case and stripping **).

Mistral

Mistral took 20 hours to process just over half of the change log entries (2,027 out of 3,839). It processed input at around 8 tokens per second and output at around 2.5 tokens per second.

When Mistral could not identify a named entity, it reported this using a variety of responses, e.g., “In the given …”, “There are no …”, “In this sentence …”.

Around 5.8 named entities per change log entry were generated. Many of the responses were obviously not named entities, and there were many instances of it listing clauses within the text, or even complete sentences. The table below shows the number of named entities containing a given number of ‘words’:

# words   1    2    3    4    5    6    7    8    9   10   11   12   13   14
Occur  3274 1843  828  361  211  130  132   90   69   90   68   46   49   27

A total of 11,720 named entities were produced, of which 4,880 were unique (ignoring case).

Evidence-based Software Engineering book: the last year

November 5, 2023 No comments

It’s now three years since my book, Evidence-based Software Engineering: based on the publicly available data, was released. What has happened in the last year, since I wrote about the first two years, and what might happen in the next year or so?

There is now a Discord channel for discussing evidence-based software engineering. Blog readers and anyone with an interest in the subject are most welcome.

I keep a copy of software related papers that I think might be worth looking at again, and have been meaning to make this list public. A question by ysch, a Discord channel member, asked after ways of checking whether a software paper was worth reading. This prompted me to create a Github repo containing the titles of these 7,756 saved papers, along with some data related annotations. On the more general question of paper quality, my view is that most papers are not worth reading, with a few being very well worth reading. People have to develop techniques for rapidly filtering out the high volume of drivel; techniques I use, and understanding the publication ecosystem.

This last year saw the sudden arrival of a new tool, LLMs. My experience with using ChatGPT (and other such LLMs) as an evidence-based research tool is that the answers are too generic or just plain wrong (for several months, one LLM reported that I had a degree in Divinity Studies). If I was writing a book, I suspect that they would provide a worthwhile copy-editing service.

I was hoping that the recently released GPT-4 vision model would do high quality text extraction from scanned pdfs, but the quality of output I have received is about the same as traditional OCR-based tools. I expect that the data extraction ability LLM based tools will get a lot better, because they are at the start of the learning curve and there is a commercial incentive for them to be a lot better.

An LLM is driven by the token weights learned during training. Roughly speaking, the more training data on a topic, the larger the trained weights for that topic. There is not a lot of data (i.e., text) relating to evidence-based software engineering, compared to the huge quantities available for some topics, so responses are generic and often parrot established folklore. The following image was generated by DALL-E3:

Generate an image of white male and Asian female leprechaun engineers examining software to check that it follows well-known folklore traditions that are claimed to ensure correct behavior.

There is a tale of software product evolution waiting to be told via the data contained in magazine adverts; the magazines are on bitsavers, we just need LLMs to be good enough to reliably extract advert contents (currently, too many hallucinations).

The book contents continue to survive almost completely unscathed, primarily because reader feedback continues to be almost non-existent. Despite the close to 500k downloads (now averaging 4k-5k downloads per month, from the logs I have, with the mobile friendly version around 10%), most people I meet have not heard of the book. The concept of an evidence-based approach to software engineering continues to be met with blank looks, although a commonly cited listener use case for the book’s data is validating a pet theory (my suggestion that the data may show their pet theory to be wrong is not appreciated).

Analysis/data in the following blog posts, from the last 12-months, belongs in the book in some form or other:

Some human biases in conditional reasoning

Unneeded requirements implemented in Waterfall & Agile

Analysis of Cost Performance Index for 338 projects

Evaluating Story point estimation error

Frequency of non-linear relationships in software engineering data

Analysis of when refactoring becomes cost-effective

An evidence-based software engineering book from 2002

Perturbed expressions may ‘recover’

Predicting the size of the Linux kernel binary

Benchmarking fuzzers

Local variable naming: some previously unexplored factors

Optimal function length: an analysis of the cited data

Some data on the size of Cobol programs/paragraphs
Hardware/Software cost ratio folklore

Criteria for increased productivity investment

Likelihood of encountering a given sequence of statements

Design of the Whetstone benchmark

Relative performance of computers from the 1950s/60s/70s

LLMs and doing software engineering research

September 24, 2023 No comments

This week I attended the 65th COW workshop, the theme was Automated Program Repair and Genetic Improvement.

I first learned about using genetic programming to automatically fix reported faults at the 1st COW workshop in 2009. Claire Le Goues, a PhD student at that workshop, now a professor, returned to talk about the latest program repair work of her research group.

COW speakers are usually very upbeat, but uncertainty about the future was the general feeling I got from speakers at this workshop. The cause of this uncertainty was the topic of some talks and conversations: LLMs. Adding an LLM into the program repair process can produce a dramatic performance improvement.

Isn’t a dramatic performance improvement and a new technique great news for everyone? The performance improvement increases the likelihood of industrial adoption, and a new technique creates many opportunities for new research.

Despite claiming otherwise, most academics have zero interest in industrial adoption of their work, and some actively disdain practical uses of their work.

Major new techniques are great for PhD students; they provide an opportunity to kick-start a career by being in at the start of a new research area.

A major new technique can obsolete an established researcher’s expensively acquired area of expertise (expensive in personal time and effort). The expertise that enables a researcher to make state-of-the-art contributions to an active research area is a valuable asset; it can be used to attract funding, students and peer esteem. When a new technique dramatically improves the state-of-the-art, there is a sharp drop in the value of what is now yesterday’s know-how.

A major new technique removes some existing barriers to entering a field, and creates its own new ones. The result is that new people start working in a field, and some existing experts stop working in it.

At the workshop, I saw this process starting in automated program repair, and I imagine it’s also starting in many other research fields. It will probably take 3–5 years for the dust to start to settle; existing funded projects have to complete, and academia does not move that quickly.

A recent review of the use of LLMs in software engineering research found 229 papers; the table below shows the number of papers per year:

    Papers   Year
       7     2020
      11     2021
      51     2022
     160     2023 to end July

Assuming, say, 10K software engineering papers per year, then LLM related papers should be around 3% this year, likely in double figures next year, and possibly over 50% the year after.

Is research in software engineering en route to becoming another subfield of prompt engineering research?

Computer: Plot the data

April 30, 2023 No comments

Last Saturday I attended my first 24-hour hackathon in over 5-years (as far as I know, also the first 24-hour hackathon in London since COVID); the GenAI Hackathon.

I had a great idea for the tool to build. Readers will be familiar with the scene in sci-fi films where somebody says “Computer: Plot the data”, and a plot appears on the appropriate screen. I planned to implement this plot-the-data app using LLMs.

The easy option is to use speech to text, using something like OpenAI’s Whisper, as a front-end to a conventional plotting program. The hard option is to also use an LLM to generate the code needed to create the plot; I planned to do it the hard way.

My plan was to structure the internal functionality using langchain tools and agents. langchain can generate Python and execute this code.

I decided to get the plotting working first, and then add support for speech input. With six lines of Python I created a program that works every now and again; here is the code (which assumes that the environment variable OPENAI_API_KEY has been set to a valid OpenAI API key; the function create_csv_agent is provided by langchain):

from langchain.agents import create_csv_agent
from langchain.llms import OpenAI
 
import pandas
 
agent = create_csv_agent(OpenAI(temperature=0.0, verbose=True),
                        "aug-oct_day_items.csv", verbose=True)
 
agent.run("Plot the Aug column against Oct column.")

Sometimes this program figures out that it needs to call matplotlib to display the data, sometimes its output is a set of instructions for how this plot functionality could be implemented, sometimes multiple plots appear (with lines connecting points, and/or a scatter plot).

Like me, and others, readers who have scratched the surface of LLMs have read that setting the argument temperature=0.0 ensures that the output is always the same. In theory this is true, but in practice the implementation of LLMs contains some intrinsic non-determinism.

The behavior can be made more consistent by giving explicit instructions (just like dealing with humans). I prefixed the user input instructions to use matplotlib, use column names as the axis labels, and to generate a scatter plot, finally a request to display the plot is appended.

In the following code, the first call to plot_data specifies the ‘two month columns’, and the appropriate columns are selected from the csv file.

from langchain.agents import create_csv_agent
from langchain.llms import OpenAI
 
import pandas
 
def plot_data(file_str, usr_str):
   agent = create_csv_agent(OpenAI(temperature=0.0, model_name="text-davinci-003", verbose=True),
                        file_str, verbose=True)
 
   plot_txt="Use matplotlib to plot data and" +\
   " use the column names for axis labels." +\
   " I want you to create a scatter " +\
   usr_str + " Display the plot."
   agent.run(plot_txt)
 
plot_data("aug-oct_day_items.csv",
          "plot using the two month columns.")
 
plot_data("task-est-act.csv",
          "plot using the estimates and actuals.")
plot_data("task-est-act.csv",
          "plot the estimates and actuals using a logarithmic scale.")

The first call to plot_data worked as expected, producing the following plot (code+data):

Plot of month data generated by OpenAI generating Python.

The second call failed with an ‘internal’ error. The generated Python has incorrect indentation:

IndentationError: unexpected indent (<unknown>, line 2)
I need to make sure I have the correct indentation.

While the langchain agent states what it needs to do to correct the error, it repeats the same mistake several times before giving up.

Like a well-trained developer, I set about trying different options (e.g., changing the language model) and searching various question/answer sites. No luck.

Finally, I broke with software developer behavior and added the line “Use the same indentation for each python statement.” to the prompt. Prompt engineering behavior is to explicitly tell the LLM what to do, not to fiddle with configuration options.

So now the second call to plot_data works, and the third call sometimes does odd things.

At the hack I failed to convince anybody else to work on this project with me. So I joined another project and helped out (they were very competent and did not really need my help), while fiddling with the Plot-the-data idea.

The code+test data is in the Plot-the-data Github repo. Pull requests welcome.

Categories: Uncategorized Tags: , , ,

Is the code reuse problem now solved?

April 23, 2023 No comments

Writing a program to solve a problem involves breaking the problem down into subcomponents that have a known coding solution, and connecting the input/output of these subcomponents into sequences that produced the desired behavior.

When computers first became available, developers had to write every subcomponent. It was soon noticed that new programs contained some functionality that was identical to functionality present in previously written programs, and software libraries were created to reduce development cost/time through reuse of existing code. Developers have being sharing code since the very start of computing.

To be commercially viable, computer manufacturers discovered that they not only had to provide vendor specific libraries, they also had to support general purpose functionality, e.g., sorting and maths libraries.

The Internet significantly reduced the cost of finding and distributing software, enabling an explosion in the quality and quantity of publicly available source code. It became possible to write major subcomponents by gluing together third-party libraries and packages (subject to licensing issues).

Diversity of the ecosystems in which libraries/packages have to function means that developers working in different environments have to apply different glue. Computing diversity increases costs.

A lot of effort was invested in trying to increase software reuse in a very diverse world.

In the 1990 there was a dramatic reduction in diversity, caused by a dramatic reduction in the number of distinct cpus, operating systems and compilers. However, commercial and personal interests continue to drive the creation of new cpus, operating systems, languages and frameworks.

The reduction in diversity has made it cheaper to make libraries/packages more widely available, and reduced the variety of glue coding patterns. However, while glue code contains many common usage patterns, they tend not to be sufficiently substantial or distinct enough for a cost-effective reuse solution to be readily apparent.

The information available on developer question/answer sites, such as Stackoverflow, provides one form of reuse sharing for glue code.

The huge amounts of source code containing shared usage patterns are great training input for large languages models, and widespread developer interest in these patterns means that the responses from these trained models is of immediate practical use for many developers.

LLMs appear to be the long sought cost-effective solution to the technical problem of code reuse; it’s too early to say what impact licensing issues will have on widespread adoption.

One consequence of widespread LLM usage is a slowing of the adoption of new packages, because LLMs will not know anything about them. LLMs are also the death knell for fashionable new languages, which is a very good thing.

Modular Reasoning, Knowledge and Language systems

March 12, 2023 No comments

The spectrum of models of the human mind run from it being a general purpose computer to it being a collection of integrated specialist modules (each performing one function, e.g., speech or language). The Modularity of mind hypothesis offers a halfway house.

ChatGPT sits at the general purpose computer end of the spectrum; there is a single ‘processor’ that accepts a particular kind of input and produces a particular kind of output.

While predict-the-next-token systems like ChatGTP have proven to be good at analysing and constructing sentences, they are often unable to carry out the actions described by these sentences; for instance, they are capable of describing mathematical operations that they are incapable of performing (unless the answer happens to be in their training).

A Modular Reasoning, Knowledge and Language system (MRKL; the suggested pronunciation is miracle), is, as the name suggests, a system built from specialist modules. In this approach, a large language model (LLM), such as ChatGTP, is the language processing module.

In a MRKL system, the input is processed (by an LLM) to figure out which specialist modules have to be queried to obtain the information needed to answer the question, the appropriate text (generated by an LLM) is fed as input to the corresponding modules, and the module outputs are collected and fed to an LLM to generate an answer to the question.

A user question may involve querying multiple modules in some sequence. For instance, the question “What is the average age of the last five British Prime ministers?” might involve querying Google/Alexa answers to obtain a list of previous Prime ministers, followed by extracting individual ages from Wikipedia, followed by querying a maths module to obtain the average of the five ages obtained.

The extent to which an application using an LLM might be said to be a MRKL system is a matter of degree. The following shell script is unlikely to qualify:

  curl https://api.openai.com/v1/completions \
    -H 'Content-Type: application/json' \
    -H 'Authorization: Bearer '{$OPENAI_API_KEY} \
    -d '{
       "model": "text-davinci-003",
       "prompt": "Say I found The Shape of Code to be an interesting blog",
       "temperature": 0
       }'

The OpenAI API focuses on how to drive their various language models, along with lots of examples. There is no API offering a higher level abstraction or functionality.

An API designed for building MRKL systems, that is starting to gain traction, is langchain; a collection of Python packages, with JavaScript libraries playing catchup.

langchain Module categories include: LLM interaction (e.g., specifying which LLM to use, API keys, and changing default values), document loaders (e.g., readers for pdf, HTML, Gitbook, and Microsoft Word), Agents (these use an LLM to process the input text to find out what actions need to be performed, and to create the input actions that the selected modules need to perform), Memory (store information from previous interactions; other modules can be stateless), and Chat (handle the mechanics of holding a conversation).

What does langchain offer that is making it attractive to a growing number of developers?

  • Making use of an LLM within an application will involve some subset of the functionality provided by langchain. The advantage of using langchain is that it provides a framework, MRKL, along with a (sometimes skeleton) existing implementation,
  • first mover advantage for an Open source implementation has enabled langchain to attract a growing number of active contributors; it also helps that the core developers have been making regular updates (almost daily), and half-decent documentation is available.

Given the current volume of discussion around LLMs, why has there been so little written about MRKL systems?

Building a MRKL system requires coding ability, and developers are a small percentage of those contributing to the discussion avalanche.

Building a MRML system takes a lot of time and work. Being able to break down a question into subcomponents that can be answered by the available modules, and sequencing them appropriately is a non-trivial problem.

Once Apps solving real-world problems start becoming widely used, and the novelty of generic chat systems wears off, the discussion will switch to more grounded issues.